Cache and energy efficient algorithms for Nussinov’s RNA Folding

Cache and energy efficient algorithms for Nussinov’s RNA Folding

Abstract Background An RNA folding/RNA secondary structure prediction algorithm determines the non-nested/pseudoknot-free structure by maximizing the number of complementary base pairs and minimizing the energy. Several implementations of Nussinov’s classical RNA folding algorithm have been proposed...

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Bibliographic Details
Main Authors: Chunchun Zhao, Sartaj Sahni
Format: Article
Language:English
Published: BMC 2017-12-01
Series:BMC Bioinformatics
Subjects:
RNA Folding
Nussinov’s algorithm
Cache efficient
Online Access:http://link.springer.com/article/10.1186/s12859-017-1917-0

Internet

http://link.springer.com/article/10.1186/s12859-017-1917-0

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