HPC-REDItools: a novel HPC-aware tool for improved large scale RNA-editing analysis

HPC-REDItools: a novel HPC-aware tool for improved large scale RNA-editing analysis

Abstract Background RNA editing is a widespread co-/post-transcriptional mechanism that alters primary RNA sequences through the modification of specific nucleotides and it can increase both the transcriptome and proteome diversity. The automatic detection of RNA-editing from RNA-seq data is computa...

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Bibliographic Details
Main Authors: Tiziano Flati, Silvia Gioiosa, Nicola Spallanzani, Ilario Tagliaferri, Maria Angela Diroma, Graziano Pesole, Giovanni Chillemi, Ernesto Picardi, Tiziana Castrignanò
Format: Article
Language:English
Published: BMC 2020-08-01
Series:BMC Bioinformatics
Subjects:
RNA-editing
High Performance Computing
REDItools
Next Generation Sequencing
Sequence Analysis
Bioinformatics pipeline
Online Access:http://link.springer.com/article/10.1186/s12859-020-03562-x

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http://link.springer.com/article/10.1186/s12859-020-03562-x

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