Correspondence analysis for dimension reduction, batch integration, and visualization of single-cell RNA-seq data

Abstract Effective dimension reduction is essential for single cell RNA-seq (scRNAseq) analysis. Principal component analysis (PCA) is widely used, but requires continuous, normally-distributed data; therefore, it is often coupled with log-transformation in scRNAseq applications, which can distort t...

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Bibliographic Details
Main Authors: Lauren L. Hsu, Aedín C. Culhane
Format: Article
Language:English
Published: Nature Portfolio 2023-01-01
Series:Scientific Reports
Online Access:https://doi.org/10.1038/s41598-022-26434-1