GTax: improving de novo transcriptome assembly by removing foreign RNA contamination
Abstract The cost and complexity of generating a complete reference genome means that many organisms lack an annotated reference. An alternative is to use a de novo reference transcriptome. This technology is cost-effective but is susceptible to off-target RNA contamination. In this manuscript, we p...
Main Authors: | Roberto Vera Alvarez, David Landsman |
---|---|
Format: | Article |
Language: | English |
Published: |
BMC
2024-01-01
|
Series: | Genome Biology |
Online Access: | https://doi.org/10.1186/s13059-023-03141-2 |
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