ChloroSeq, an Optimized Chloroplast RNA-Seq Bioinformatic Pipeline, Reveals Remodeling of the Organellar Transcriptome Under Heat Stress

ChloroSeq, an Optimized Chloroplast RNA-Seq Bioinformatic Pipeline, Reveals Remodeling of the Organellar Transcriptome Under Heat Stress

Although RNA-Seq has revolutionized transcript analysis, organellar transcriptomes are rarely assessed even when present in published datasets. Here, we describe the development and application of a rapid and convenient method, ChloroSeq, to delineate qualitative and quantitative features of chlorop...

Full description

Bibliographic Details
Main Authors: Benoît Castandet, Amber M. Hotto, Susan R. Strickler, David B. Stern
Format: Article
Language:English
Published: Oxford University Press 2016-09-01
Series:G3: Genes, Genomes, Genetics
Subjects:
Arabidopsis thaliana
chloroplast
RNA-Seq
heat stress
transcriptome
noncoding RNAs
introns
RNA splicing
RNA editing
Online Access:http://g3journal.org/lookup/doi/10.1534/g3.116.030783

Internet

http://g3journal.org/lookup/doi/10.1534/g3.116.030783

Similar Items