MetaPop: a pipeline for macro- and microdiversity analyses and visualization of microbial and viral metagenome-derived populations

MetaPop: a pipeline for macro- and microdiversity analyses and visualization of microbial and viral metagenome-derived populations

Abstract Background Microbes and their viruses are hidden engines driving Earth’s ecosystems from the oceans and soils to humans and bioreactors. Though gene marker approaches can now be complemented by genome-resolved studies of inter-(macrodiversity) and intra-(microdiversity) population variation...

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Bibliographic Details
Main Authors: Ann C. Gregory, Kenji Gerhardt, Zhi-Ping Zhong, Benjamin Bolduc, Ben Temperton, Konstantinos T. Konstantinidis, Matthew B. Sullivan
Format: Article
Language:English
Published: BMC 2022-03-01
Series:Microbiome
Subjects:
Metagenomes
Visualization
SNP profiling
Community ecology
Population genetics
Macrodiversity
Online Access:https://doi.org/10.1186/s40168-022-01231-0

Internet

https://doi.org/10.1186/s40168-022-01231-0

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