Graph-based pangenomics maximizes genotyping density and reveals structural impacts on fungal resistance in melon

The power of pangenomic graphs to improve genetic mapping is still unclear. Here, the authors demonstrate its value in identification of genetic variants associated with disease resistance traits in melon using PanPipes, a pangenome construction and low-coverage genotype-by-sequencing pipeline.

Bibliographic Details
Main Authors: Justin N. Vaughn, Sandra E. Branham, Brian Abernathy, Amanda M. Hulse-Kemp, Adam R. Rivers, Amnon Levi, William P. Wechter
Format: Article
Language:English
Published: Nature Portfolio 2022-12-01
Series:Nature Communications
Online Access:https://doi.org/10.1038/s41467-022-35621-7