Surveillance of emerging SARS-CoV-2 variants by nanopore technology-based genome sequencing

Surveillance of emerging SARS-CoV-2 variants by nanopore technology-based genome sequencing

Objective: To surveill emerging variants by nanopore technology-based genome sequencing in different COVID-19 waves in Sri Lanka and to examine the association with the sample characteristics, and vaccination status. Methods: The study analyzed 207 RNA positive swab samples received to sequence labo...

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Bibliographic Details
Main Authors: J I Abeynayake, G P Chathuranga, MA Y Fernando, M K Sahoo
Format: Article
Language:English
Published: Wolters Kluwer Medknow Publications 2023-01-01
Series:Asian Pacific Journal of Tropical Medicine
Subjects:
emerging sars-cov-2 variants; laboratory surveillance; nanopore technology; genome sequencing; bioinformatics analysis and phylogeny; sociodemographic and sample cutoff (ct) threshold; global sharing of genomic data/gisaid
Online Access:http://www.apjtm.org/article.asp?issn=1995-7645;year=2023;volume=16;issue=7;spage=313;epage=320;aulast=Abeynayake

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http://www.apjtm.org/article.asp?issn=1995-7645;year=2023;volume=16;issue=7;spage=313;epage=320;aulast=Abeynayake

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