HiCUP: pipeline for mapping and processing Hi-C data [version 1; referees: 2 approved, 1 approved with reservations]

HiCUP: pipeline for mapping and processing Hi-C data [version 1; referees: 2 approved, 1 approved with reservations]

HiCUP is a pipeline for processing sequence data generated by Hi-C and Capture Hi-C (CHi-C) experiments, which are techniques used to investigate three-dimensional genomic organisation. The pipeline maps data to a specified reference genome and removes artefacts that would otherwise hinder subsequen...

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Bibliographic Details
Main Authors: Steven Wingett, Philip Ewels, Mayra Furlan-Magaril, Takashi Nagano, Stefan Schoenfelder, Peter Fraser, Simon Andrews
Format: Article
Language:English
Published: F1000 Research Ltd 2015-11-01
Series:F1000Research
Subjects:
Bioinformatics
Genomics
Online Access:http://f1000research.com/articles/4-1310/v1

Internet

http://f1000research.com/articles/4-1310/v1

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