Precision metagenomics sequencing for food safety: hybrid assembly of Shiga toxin-producing Escherichia coli in enriched agricultural water

Precision metagenomics sequencing for food safety: hybrid assembly of Shiga toxin-producing Escherichia coli in enriched agricultural water

Culture-independent metagenomic sequencing of enriched agricultural water could expedite the detection and virulotyping of Shiga toxin-producing Escherichia coli (STEC). We previously determined the limits of a complete, closed metagenome-assembled genome (MAG) assembly and of a complete, fragmented...

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Bibliographic Details
Main Authors: Meghan Maguire, Padmini Ramachandran, Sandra Tallent, Mark K. Mammel, Eric W. Brown, Marc W. Allard, Steven M. Musser, Narjol González-Escalona
Format: Article
Language:English
Published: Frontiers Media S.A. 2023-08-01
Series:Frontiers in Microbiology
Subjects:
foodborne pathogens
Escherichia coli
nanopore sequencing
short-read sequencing
pre-harvest agricultural water
metagenomics
Online Access:https://www.frontiersin.org/articles/10.3389/fmicb.2023.1221668/full

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https://www.frontiersin.org/articles/10.3389/fmicb.2023.1221668/full

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