Learning Hyperbolic Embedding for Phylogenetic Tree Placement and Updates

Phylogenetic placement, used widely in ecological analyses, seeks to add a new species to an existing tree. A deep learning approach was previously proposed to estimate the distance between query and backbone species by building a map from gene sequences to a high-dimensional space that preserves sp...

Full description

Bibliographic Details
Main Authors: Yueyu Jiang, Puoya Tabaghi, Siavash Mirarab
Format: Article
Language:English
Published: MDPI AG 2022-08-01
Series:Biology
Subjects:
Online Access:https://www.mdpi.com/2079-7737/11/9/1256