Performance Characteristics of Next-Generation Sequencing for the Detection of Antimicrobial Resistance Determinants in Escherichia coli Genomes and Metagenomes

Performance Characteristics of Next-Generation Sequencing for the Detection of Antimicrobial Resistance Determinants in Escherichia coli Genomes and Metagenomes

ABSTRACT Short-read sequencing can provide detection of multiple genomic determinants of antimicrobial resistance from single bacterial genomes and metagenomic samples. Despite its increasing application in human, animal, and environmental microbiology, including human clinical trials, the performan...

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Bibliographic Details
Main Authors: Ashley M. Rooney, Amogelang R. Raphenya, Roberto G. Melano, Christine Seah, Noelle R. Yee, Derek R. MacFadden, Andrew G. McArthur, Pierre H. H. Schneeberger, Bryan Coburn
Format: Article
Language:English
Published: American Society for Microbiology 2022-06-01
Series:mSystems
Subjects:
antimicrobial resistance gene detection
whole genome
microbiome
resistome
sequencing
metagenome
Online Access:https://journals.asm.org/doi/10.1128/msystems.00022-22

Internet

https://journals.asm.org/doi/10.1128/msystems.00022-22

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