Oxford Nanopore and Bionano Genomics technologies evaluation for plant structural variation detection

Oxford Nanopore and Bionano Genomics technologies evaluation for plant structural variation detection

Abstract Background Structural Variations (SVs) are genomic rearrangements derived from duplication, deletion, insertion, inversion, and translocation events. In the past, SVs detection was limited to cytological approaches, then to Next-Generation Sequencing (NGS) short reads and partitioned assemb...

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Bibliographic Details
Main Authors: Aurélie Canaguier, Romane Guilbaud, Erwan Denis, Ghislaine Magdelenat, Caroline Belser, Benjamin Istace, Corinne Cruaud, Patrick Wincker, Marie-Christine Le Paslier, Patricia Faivre-Rampant, Valérie Barbe
Format: Article
Language:English
Published: BMC 2022-04-01
Series:BMC Genomics
Subjects:
Structural variations
Oxford Nanopore technologies
Bionano Genomics optical mapping
High molecular weight DNA
Arabidopsis thaliana
Online Access:https://doi.org/10.1186/s12864-022-08499-4

Internet

https://doi.org/10.1186/s12864-022-08499-4

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