RIP-MD: a tool to study residue interaction networks in protein molecular dynamics

Protein structure is not static; residues undergo conformational rearrangements and, in doing so, create, stabilize or break non-covalent interactions. Molecular dynamics (MD) is a technique used to simulate these movements with atomic resolution. However, given the data-intensive nature of the tech...

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Bibliographic Details
Main Authors: Sebastián Contreras-Riquelme, Jose-Antonio Garate, Tomas Perez-Acle, Alberto J.M. Martin
Format: Article
Language:English
Published: PeerJ Inc. 2018-12-01
Series:PeerJ
Subjects:
Online Access:https://peerj.com/articles/5998.pdf