Median quartet tree search algorithms using optimal subtree prune and regraft

Abstract Gene trees can be different from the species tree due to biological processes and inference errors. One way to obtain a species tree is to find one that maximizes some measure of similarity to a set of gene trees. The number of shared quartets between a potential species tree and gene trees...

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Bibliographic Details
Main Authors: Shayesteh Arasti, Siavash Mirarab
Format: Article
Language:English
Published: BMC 2024-03-01
Series:Algorithms for Molecular Biology
Subjects:
Online Access:https://doi.org/10.1186/s13015-024-00257-3