A consensus-based ensemble approach to improve transcriptome assembly

A consensus-based ensemble approach to improve transcriptome assembly

Abstract Background Systems-level analyses, such as differential gene expression analysis, co-expression analysis, and metabolic pathway reconstruction, depend on the accuracy of the transcriptome. Multiple tools exist to perform transcriptome assembly from RNAseq data. However, assembling high qual...

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Bibliographic Details
Main Authors: Adam Voshall, Sairam Behera, Xiangjun Li, Xiao-Hong Yu, Kushagra Kapil, Jitender S. Deogun, John Shanklin, Edgar B. Cahoon, Etsuko N. Moriyama
Format: Article
Language:English
Published: BMC 2021-10-01
Series:BMC Bioinformatics
Subjects:
RNAseq
Illumina
Transcriptome assembly
De novo assembly
Genome-guided assembly
Ensemble assembly
Online Access:https://doi.org/10.1186/s12859-021-04434-8

Internet

https://doi.org/10.1186/s12859-021-04434-8

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