ARGem: a new metagenomics pipeline for antibiotic resistance genes: metadata, analysis, and visualization

ARGem: a new metagenomics pipeline for antibiotic resistance genes: metadata, analysis, and visualization

Antibiotic resistance is of crucial interest to both human and animal medicine. It has been recognized that increased environmental monitoring of antibiotic resistance is needed. Metagenomic DNA sequencing is becoming an attractive method to profile antibiotic resistance genes (ARGs), including a sp...

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Bibliographic Details
Main Authors: Xiao Liang, Jingyi Zhang, Yoonjin Kim, Josh Ho, Kevin Liu, Ishi Keenum, Suraj Gupta, Benjamin Davis, Shannon L. Hepp, Liqing Zhang, Kang Xia, Katharine F. Knowlton, Jingqiu Liao, Peter J. Vikesland, Amy Pruden, Lenwood S. Heath
Format: Article
Language:English
Published: Frontiers Media S.A. 2023-09-01
Series:Frontiers in Genetics
Subjects:
antibiotic resistance genes
workflow
metagenomics
bioinformatics
genome annotation
Online Access:https://www.frontiersin.org/articles/10.3389/fgene.2023.1219297/full

Internet

https://www.frontiersin.org/articles/10.3389/fgene.2023.1219297/full

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