scATACpipe: A nextflow pipeline for comprehensive and reproducible analyses of single cell ATAC-seq data

scATACpipe: A nextflow pipeline for comprehensive and reproducible analyses of single cell ATAC-seq data

Single cell ATAC-seq (scATAC-seq) has become the most widely used method for profiling open chromatin landscape of heterogeneous cell populations at a single-cell resolution. Although numerous software tools and pipelines have been developed, an easy-to-use, scalable, reproducible, and comprehensive...

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Bibliographic Details
Main Authors: Kai Hu, Haibo Liu, Nathan D. Lawson, Lihua Julie Zhu
Format: Article
Language:English
Published: Frontiers Media S.A. 2022-09-01
Series:Frontiers in Cell and Developmental Biology
Subjects:
scATAC-seq
chromatin accessibility
single cell
nextflow
pipeline
transcription factor activity and footprinting analysis
Online Access:https://www.frontiersin.org/articles/10.3389/fcell.2022.981859/full

Internet

https://www.frontiersin.org/articles/10.3389/fcell.2022.981859/full

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