Stress-induced expression is enriched for evolutionarily young genes in diverse budding yeasts

Stress-induced expression is enriched for evolutionarily young genes in diverse budding yeasts

Fermentation parameters of industrial processes are often not the ideal growth conditions for industrial microbes. Here, the authors reveal that young genes are more responsive to environmental stress than ancient genes using a new gene age assignment method and provide targeted genes for metabolic...

Deskribapen osoa

Xehetasun bibliografikoak
Egile Nagusiak:	Tyler W. Doughty, Iván Domenzain, Aaron Millan-Oropeza, Noemi Montini, Philip A. de Groot, Rui Pereira, Jens Nielsen, Céline Henry, Jean-Marc G. Daran, Verena Siewers, John P. Morrissey
Formatua:	Artikulua
Hizkuntza:	English
Argitaratua:	Nature Portfolio 2020-05-01
Saila:	Nature Communications
Sarrera elektronikoa:	https://doi.org/10.1038/s41467-020-16073-3

Antzeko izenburuak

Reconstruction of a catalogue of genome-scale metabolic models with enzymatic constraints using GECKO 2.0
nork: Iván Domenzain, et al.
Argitaratua: (2022-06-01)

Enrichment of aging yeast cells and budding polarity assay in Saccharomyces cerevisiae
nork: Emily J. Yang, et al.
Argitaratua: (2022-09-01)

Genome-wide characterisation of the Gcn5 histone acetyltransferase in budding yeast during stress adaptation reveals evolutionarily conserved and diverged roles
nork: Brodin David, et al.
Argitaratua: (2010-03-01)

Model‐guided development of an evolutionarily stable yeast chassis
nork: Filipa Pereira, et al.
Argitaratua: (2021-07-01)

RNAi in Budding Yeast
nork: Drinnenberg, Ines A., et al.
Argitaratua: (2013)

Production of fatty acid-derived oleochemicals and biofuels by synthetic yeast cell factories
nork: Yongjin J. Zhou, et al.
Argitaratua: (2016-05-01)

An Evolutionarily Conserved Enhancer Regulates Bmp4 Expression in Developing Incisor and Limb Bud
nork: Jumlongras, Dolrudee, et al.
Argitaratua: (2012)

An evolutionarily conserved enhancer regulates Bmp4 expression in developing incisor and limb bud.
nork: Dolrudee Jumlongras, et al.
Argitaratua: (2012-01-01)

The integrated stress response in budding yeast lifespan extension
nork: Spike D.L. Postnikoff, et al.
Argitaratua: (2017-10-01)

Profiling of cytosolic and peroxisomal acetyl-CoA metabolism in Saccharomyces cerevisiae.
nork: Yun Chen, et al.
Argitaratua: (2012-01-01)

Ribosome occupancy profiles are conserved between structurally and evolutionarily related yeast domains
nork: Nissley, D, et al.
Argitaratua: (2021)

Effects of Age on Meiosis in Budding Yeast
nork: Boselli, Monica, et al.
Argitaratua: (2012)

Behavior of dicentric chromosomes in budding yeast.
nork: Diana Cook, et al.
Argitaratua: (2021-03-01)

Septin organization and functions in budding yeast
nork: Oliver Glomb, et al.
Argitaratua: (2016-11-01)

Electrochemical regulation of budding yeast polarity.
nork: Armin Haupt, et al.
Argitaratua: (2014-12-01)

Characterization of Bicistronic Transcription in Budding Yeast
nork: Baojun Wu, et al.
Argitaratua: (2021-02-01)

Strategy of transcription regulation in the budding yeast.
nork: Sagi Levy, et al.
Argitaratua: (2007-01-01)

A novel yeast hybrid modeling framework integrating Boolean and enzyme-constrained networks enables exploration of the interplay between signaling and metabolism.
nork: Linnea Österberg, et al.
Argitaratua: (2021-04-01)

An evolutionarily conserved stop codon enrichment at the 5′ ends of mammalian piRNAs
nork: Susanne Bornelöv, et al.
Argitaratua: (2022-04-01)

Developmentally regulated internal transcription initiation during meiosis in budding yeast.
nork: Sai Zhou, et al.
Argitaratua: (2017-01-01)

Transcriptional and genomic mayhem due to aging-induced nucleosome loss in budding yeast
nork: Zheng Hu, et al.
Argitaratua: (2014-04-01)

Fission yeast hotspot sequence motifs are also active in budding yeast.
nork: Walter W Steiner, et al.
Argitaratua: (2012-01-01)

Budding yeast complete DNA synthesis after chromosome segregation begins
nork: Tsvetomira Ivanova, et al.
Argitaratua: (2020-05-01)

Modeling and simulation of cell cycle in budding yeast
nork: Mandar Chitre.
Argitaratua: (2008)

The effect of cell geometry on polarization in budding yeast.
nork: Michael Trogdon, et al.
Argitaratua: (2018-06-01)

Septin Organization and Dynamics for Budding Yeast Cytokinesis
nork: Maritzaida Varela Salgado, et al.
Argitaratua: (2024-09-01)

Conservation of the COP9/signalosome in budding yeast
nork: Susan Wee, et al.
Argitaratua: (2002-08-01)

Defining the budding yeast chromatin‐associated interactome
nork: Jean‐Philippe Lambert, et al.
Argitaratua: (2010-12-01)

RNA-Mediated Regulation of Meiosis in Budding Yeast
nork: Vidya Vardhini Pondugala, et al.
Argitaratua: (2022-11-01)

Genetic variation in adaptability and pleiotropy in budding yeast
nork: Elizabeth R Jerison, et al.
Argitaratua: (2017-08-01)

Conservation of the COP9/signalosome in budding yeast
nork: Dubiel Wolfgang, et al.
Argitaratua: (2002-08-01)

Mitochondrial Tethers and Their Impact on Lifespan in Budding Yeast
nork: Wolfgang M. Pernice, et al.
Argitaratua: (2018-01-01)

Centromere-like regions in the budding yeast genome.
nork: Philippe Lefrançois, et al.
Argitaratua: (2013-01-01)

Protocol to quantify palmitoylation of cysteines in budding yeast
nork: Yuqing Lei, et al.
Argitaratua: (2022-03-01)

Protocol for measuring sphingolipid metabolism in budding yeast
nork: Atsuko Ikeda, et al.
Argitaratua: (2021-06-01)

The Genetic Requirements for Pentose Fermentation in Budding Yeast
nork: Karin Mittelman, et al.
Argitaratua: (2017-06-01)

Improving Production of Malonyl Coenzyme A-Derived Metabolites by Abolishing Snf1-Dependent Regulation of Acc1
nork: Shuobo Shi, et al.
Argitaratua: (2014-07-01)

Engineering Saccharomyces cerevisiae cells for production of fatty acid-derived biofuels and chemicals
nork: Yating Hu, et al.
Argitaratua: (2019-05-01)

Evolutionarily conserved sites in yeast tropomyosin function in cell polarity, transport and contractile ring formation
nork: Susanne Cranz-Mileva, et al.
Argitaratua: (2015-08-01)

A modeling study of budding yeast colony formation and its relationship to budding pattern and aging.
nork: Yanli Wang, et al.
Argitaratua: (2017-11-01)