BOMA, a machine-learning framework for comparative gene expression analysis across brains and organoids
Summary: Our machine-learning framework, brain and organoid manifold alignment (BOMA), first performs a global alignment of developmental gene expression data between brains and organoids. It then applies manifold learning to locally refine the alignment, revealing conserved and specific development...
Main Authors: | Chenfeng He, Noah Cohen Kalafut, Soraya O. Sandoval, Ryan Risgaard, Carissa L. Sirois, Chen Yang, Saniya Khullar, Marin Suzuki, Xiang Huang, Qiang Chang, Xinyu Zhao, Andre M.M. Sousa, Daifeng Wang |
---|---|
Format: | Article |
Language: | English |
Published: |
Elsevier
2023-02-01
|
Series: | Cell Reports: Methods |
Subjects: | |
Online Access: | http://www.sciencedirect.com/science/article/pii/S2667237523000206 |
Similar Items
-
CGG repeats in the human FMR1 gene regulate mRNA localization and cellular stress in developing neurons
by: Carissa L. Sirois, et al.
Published: (2024-06-01) -
Trans-omic profiling uncovers molecular controls of early human cerebral organoid formation
by: Carissa Chen, et al.
Published: (2024-05-01) -
Epithelial organoid supports resident memory CD8 T cell differentiation
by: Max R. Ulibarri, et al.
Published: (2024-08-01) -
Generation of human cerebral organoids with a structured outer subventricular zone
by: Ryan M. Walsh, et al.
Published: (2024-04-01) -
The chromodomain protein CDYL confers forebrain identity to human cortical organoids by inhibiting neuronatin
by: Yaming Yang, et al.
Published: (2024-10-01)