RUFY3 regulates endolysosomes perinuclear positioning, antigen presentation and migration in activated phagocytes

Abstract Endo-lysosomes transport along microtubules and clustering in the perinuclear area are two necessary steps for microbes to activate specialized phagocyte functions. We report that RUN and FYVE domain-containing protein 3 (RUFY3) exists as two alternative isoforms distinguishable by the pres...

Full description

Bibliographic Details
Main Authors: Rémy Char, Zhuangzhuang Liu, Cédric Jacqueline, Marion Davieau, Maria-Graciela Delgado, Clara Soufflet, Mathieu Fallet, Lionel Chasson, Raphael Chapuy, Voahirana Camosseto, Eva Strock, Rejane Rua, Catarina R. Almeida, Bing Su, Ana-Maria Lennon-Duménil, Beatrice Nal, Antoine Roquilly, Yinming Liang, Stéphane Méresse, Evelina Gatti, Philippe Pierre
Format: Article
Language:English
Published: Nature Portfolio 2023-07-01
Series:Nature Communications
Online Access:https://doi.org/10.1038/s41467-023-40062-x
_version_ 1797774079103598592
author Rémy Char
Zhuangzhuang Liu
Cédric Jacqueline
Marion Davieau
Maria-Graciela Delgado
Clara Soufflet
Mathieu Fallet
Lionel Chasson
Raphael Chapuy
Voahirana Camosseto
Eva Strock
Rejane Rua
Catarina R. Almeida
Bing Su
Ana-Maria Lennon-Duménil
Beatrice Nal
Antoine Roquilly
Yinming Liang
Stéphane Méresse
Evelina Gatti
Philippe Pierre
author_facet Rémy Char
Zhuangzhuang Liu
Cédric Jacqueline
Marion Davieau
Maria-Graciela Delgado
Clara Soufflet
Mathieu Fallet
Lionel Chasson
Raphael Chapuy
Voahirana Camosseto
Eva Strock
Rejane Rua
Catarina R. Almeida
Bing Su
Ana-Maria Lennon-Duménil
Beatrice Nal
Antoine Roquilly
Yinming Liang
Stéphane Méresse
Evelina Gatti
Philippe Pierre
author_sort Rémy Char
collection DOAJ
description Abstract Endo-lysosomes transport along microtubules and clustering in the perinuclear area are two necessary steps for microbes to activate specialized phagocyte functions. We report that RUN and FYVE domain-containing protein 3 (RUFY3) exists as two alternative isoforms distinguishable by the presence of a C-terminal FYVE domain and by their affinity for phosphatidylinositol 3-phosphate on endosomal membranes. The FYVE domain-bearing isoform (iRUFY3) is preferentially expressed in primary immune cells and up-regulated upon activation by microbes and Interferons. iRUFY3 is necessary for ARL8b + /LAMP1+ endo-lysosomes positioning in the pericentriolar organelles cloud of LPS-activated macrophages. We show that iRUFY3 controls macrophages migration, MHC II presentation and responses to Interferon-γ, while being important for intracellular Salmonella replication. Specific inactivation of rufy3 in phagocytes leads to aggravated pathologies in mouse upon LPS injection or bacterial pneumonia. This study highlights the role of iRUFY3 in controlling endo-lysosomal dynamics, which contributes to phagocyte activation and immune response regulation.
first_indexed 2024-03-12T22:15:48Z
format Article
id doaj.art-4a23f4a1b15044b5bbac175e040f08dd
institution Directory Open Access Journal
issn 2041-1723
language English
last_indexed 2024-03-12T22:15:48Z
publishDate 2023-07-01
publisher Nature Portfolio
record_format Article
series Nature Communications
spelling doaj.art-4a23f4a1b15044b5bbac175e040f08dd2023-07-23T11:18:28ZengNature PortfolioNature Communications2041-17232023-07-0114112010.1038/s41467-023-40062-xRUFY3 regulates endolysosomes perinuclear positioning, antigen presentation and migration in activated phagocytesRémy Char0Zhuangzhuang Liu1Cédric Jacqueline2Marion Davieau3Maria-Graciela Delgado4Clara Soufflet5Mathieu Fallet6Lionel Chasson7Raphael Chapuy8Voahirana Camosseto9Eva Strock10Rejane Rua11Catarina R. Almeida12Bing Su13Ana-Maria Lennon-Duménil14Beatrice Nal15Antoine Roquilly16Yinming Liang17Stéphane Méresse18Evelina Gatti19Philippe Pierre20Aix Marseille Université, CNRS, INSERM, CIMLSchool of Laboratory Medicine, Xinxiang Medical UniversityNantes Université, CHU Nantes, INSERM, Center for Research in Transplantation and Translational ImmunologyNantes Université, CHU Nantes, INSERM, Center for Research in Transplantation and Translational ImmunologyINSERM U932, Institut CurieAix Marseille Université, CNRS, INSERM, CIMLAix Marseille Université, CNRS, INSERM, CIMLAix Marseille Université, CNRS, INSERM, CIMLAix Marseille Université, CNRS, INSERM, CIMLAix Marseille Université, CNRS, INSERM, CIMLAix Marseille Université, CNRS, INSERM, CIMLAix Marseille Université, CNRS, INSERM, CIMLInstitute of Biomedicine (iBiMED), Department of Medical Sciences, University of AveiroShanghai Institute of Immunology, Department of Microbiology and Immunology, Shanghai Jiao Tong University School of MedicineINSERM U932, Institut CurieAix Marseille Université, CNRS, INSERM, CIMLNantes Université, CHU Nantes, INSERM, Center for Research in Transplantation and Translational ImmunologySchool of Laboratory Medicine, Xinxiang Medical UniversityAix Marseille Université, CNRS, INSERM, CIMLAix Marseille Université, CNRS, INSERM, CIMLAix Marseille Université, CNRS, INSERM, CIMLAbstract Endo-lysosomes transport along microtubules and clustering in the perinuclear area are two necessary steps for microbes to activate specialized phagocyte functions. We report that RUN and FYVE domain-containing protein 3 (RUFY3) exists as two alternative isoforms distinguishable by the presence of a C-terminal FYVE domain and by their affinity for phosphatidylinositol 3-phosphate on endosomal membranes. The FYVE domain-bearing isoform (iRUFY3) is preferentially expressed in primary immune cells and up-regulated upon activation by microbes and Interferons. iRUFY3 is necessary for ARL8b + /LAMP1+ endo-lysosomes positioning in the pericentriolar organelles cloud of LPS-activated macrophages. We show that iRUFY3 controls macrophages migration, MHC II presentation and responses to Interferon-γ, while being important for intracellular Salmonella replication. Specific inactivation of rufy3 in phagocytes leads to aggravated pathologies in mouse upon LPS injection or bacterial pneumonia. This study highlights the role of iRUFY3 in controlling endo-lysosomal dynamics, which contributes to phagocyte activation and immune response regulation.https://doi.org/10.1038/s41467-023-40062-x
spellingShingle Rémy Char
Zhuangzhuang Liu
Cédric Jacqueline
Marion Davieau
Maria-Graciela Delgado
Clara Soufflet
Mathieu Fallet
Lionel Chasson
Raphael Chapuy
Voahirana Camosseto
Eva Strock
Rejane Rua
Catarina R. Almeida
Bing Su
Ana-Maria Lennon-Duménil
Beatrice Nal
Antoine Roquilly
Yinming Liang
Stéphane Méresse
Evelina Gatti
Philippe Pierre
RUFY3 regulates endolysosomes perinuclear positioning, antigen presentation and migration in activated phagocytes
Nature Communications
title RUFY3 regulates endolysosomes perinuclear positioning, antigen presentation and migration in activated phagocytes
title_full RUFY3 regulates endolysosomes perinuclear positioning, antigen presentation and migration in activated phagocytes
title_fullStr RUFY3 regulates endolysosomes perinuclear positioning, antigen presentation and migration in activated phagocytes
title_full_unstemmed RUFY3 regulates endolysosomes perinuclear positioning, antigen presentation and migration in activated phagocytes
title_short RUFY3 regulates endolysosomes perinuclear positioning, antigen presentation and migration in activated phagocytes
title_sort rufy3 regulates endolysosomes perinuclear positioning antigen presentation and migration in activated phagocytes
url https://doi.org/10.1038/s41467-023-40062-x
work_keys_str_mv AT remychar rufy3regulatesendolysosomesperinuclearpositioningantigenpresentationandmigrationinactivatedphagocytes
AT zhuangzhuangliu rufy3regulatesendolysosomesperinuclearpositioningantigenpresentationandmigrationinactivatedphagocytes
AT cedricjacqueline rufy3regulatesendolysosomesperinuclearpositioningantigenpresentationandmigrationinactivatedphagocytes
AT mariondavieau rufy3regulatesendolysosomesperinuclearpositioningantigenpresentationandmigrationinactivatedphagocytes
AT mariagracieladelgado rufy3regulatesendolysosomesperinuclearpositioningantigenpresentationandmigrationinactivatedphagocytes
AT clarasoufflet rufy3regulatesendolysosomesperinuclearpositioningantigenpresentationandmigrationinactivatedphagocytes
AT mathieufallet rufy3regulatesendolysosomesperinuclearpositioningantigenpresentationandmigrationinactivatedphagocytes
AT lionelchasson rufy3regulatesendolysosomesperinuclearpositioningantigenpresentationandmigrationinactivatedphagocytes
AT raphaelchapuy rufy3regulatesendolysosomesperinuclearpositioningantigenpresentationandmigrationinactivatedphagocytes
AT voahiranacamosseto rufy3regulatesendolysosomesperinuclearpositioningantigenpresentationandmigrationinactivatedphagocytes
AT evastrock rufy3regulatesendolysosomesperinuclearpositioningantigenpresentationandmigrationinactivatedphagocytes
AT rejanerua rufy3regulatesendolysosomesperinuclearpositioningantigenpresentationandmigrationinactivatedphagocytes
AT catarinaralmeida rufy3regulatesendolysosomesperinuclearpositioningantigenpresentationandmigrationinactivatedphagocytes
AT bingsu rufy3regulatesendolysosomesperinuclearpositioningantigenpresentationandmigrationinactivatedphagocytes
AT anamarialennondumenil rufy3regulatesendolysosomesperinuclearpositioningantigenpresentationandmigrationinactivatedphagocytes
AT beatricenal rufy3regulatesendolysosomesperinuclearpositioningantigenpresentationandmigrationinactivatedphagocytes
AT antoineroquilly rufy3regulatesendolysosomesperinuclearpositioningantigenpresentationandmigrationinactivatedphagocytes
AT yinmingliang rufy3regulatesendolysosomesperinuclearpositioningantigenpresentationandmigrationinactivatedphagocytes
AT stephanemeresse rufy3regulatesendolysosomesperinuclearpositioningantigenpresentationandmigrationinactivatedphagocytes
AT evelinagatti rufy3regulatesendolysosomesperinuclearpositioningantigenpresentationandmigrationinactivatedphagocytes
AT philippepierre rufy3regulatesendolysosomesperinuclearpositioningantigenpresentationandmigrationinactivatedphagocytes