Alignment- and reference-free phylogenomics with colored de Bruijn graphs

Abstract Background The increasing amount of available genome sequence data enables large-scale comparative studies. A common task is the inference of phylogenies—a challenging task if close reference sequences are not available, genome sequences are incompletely assembled, or the high number of gen...

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Bibliographic Details
Main Author: Roland Wittler
Format: Article
Language:English
Published: BMC 2020-04-01
Series:Algorithms for Molecular Biology
Subjects:
Online Access:http://link.springer.com/article/10.1186/s13015-020-00164-3