FRAGTE2: An Enhanced Algorithm to Pre-Select Closely Related Genomes for Bacterial Species Demarcation

FRAGTE2: An Enhanced Algorithm to Pre-Select Closely Related Genomes for Bacterial Species Demarcation

We previously reported on FRAGTE (hereafter termed FRAGTE1), a promising algorithm for sieving (pre-selecting genome pairs for whole-genome species demarcation). However, the overall amount of pairs sieved by FRAGTE1 is still large, requiring seriously unaffordable computing cost, especially for lar...

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Bibliographic Details
Main Authors: Jiaqi Zeng, Yuxiao Wang, Ziyao Wu, Yizhuang Zhou
Format: Article
Language:English
Published: Frontiers Media S.A. 2022-05-01
Series:Frontiers in Microbiology
Subjects:
species
bacterial genome
average nucleotide identity
tetranucleotide
bacterial identification
bioinformatics
Online Access:https://www.frontiersin.org/articles/10.3389/fmicb.2022.847439/full

Internet

https://www.frontiersin.org/articles/10.3389/fmicb.2022.847439/full

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