Comparison of methods and resources for cell-cell communication inference from single-cell RNA-Seq data

Comparison of methods and resources for cell-cell communication inference from single-cell RNA-Seq data

Multiple methods to infer cell-cell communication (CCC) from single cell data are currently available. Here, the authors systematically compare 16 CCC inference resources and 7 methods, and develop the LIANA framework as an interface to use and compare all these approaches.

Bibliographic Details
Main Authors: Daniel Dimitrov, Dénes Türei, Martin Garrido-Rodriguez, Paul L. Burmedi, James S. Nagai, Charlotte Boys, Ricardo O. Ramirez Flores, Hyojin Kim, Bence Szalai, Ivan G. Costa, Alberto Valdeolivas, Aurélien Dugourd, Julio Saez-Rodriguez
Format: Article
Language:English
Published: Nature Portfolio 2022-06-01
Series:Nature Communications
Online Access:https://doi.org/10.1038/s41467-022-30755-0

Internet

https://doi.org/10.1038/s41467-022-30755-0

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