In vitro and in silico parameters for precise cgMLST typing of Listeria monocytogenes

In vitro and in silico parameters for precise cgMLST typing of Listeria monocytogenes

Abstract Background Whole genome sequencing analyzed by core genome multi-locus sequence typing (cgMLST) is widely used in surveillance of the pathogenic bacteria Listeria monocytogenes. Given the heterogeneity of available bioinformatics tools to define cgMLST alleles, our aim was to identify param...

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Bibliographic Details
Main Authors: Federica Palma, Iolanda Mangone, Anna Janowicz, Alexandra Moura, Alexandra Chiaverini, Marina Torresi, Giuliano Garofolo, Alexis Criscuolo, Sylvain Brisse, Adriano Di Pasquale, Cesare Cammà, Nicolas Radomski
Format: Article
Language:English
Published: BMC 2022-03-01
Series:BMC Genomics
Subjects:
cgMLST
Comparability of workflows
Listeria monocytogenes
Principal component analysis
Generalized linear model
Online Access:https://doi.org/10.1186/s12864-022-08437-4

Internet

https://doi.org/10.1186/s12864-022-08437-4

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