UGbS-Flex, a novel bioinformatics pipeline for imputation-free SNP discovery in polyploids without a reference genome: finger millet as a case study

UGbS-Flex, a novel bioinformatics pipeline for imputation-free SNP discovery in polyploids without a reference genome: finger millet as a case study

Abstract Background Research on orphan crops is often hindered by a lack of genomic resources. With the advent of affordable sequencing technologies, genotyping an entire genome or, for large-genome species, a representative fraction of the genome has become feasible for any crop. Nevertheless, most...

Full description

Bibliographic Details
Main Authors: Peng Qi, Davis Gimode, Dipnarayan Saha, Stephan Schröder, Debkanta Chakraborty, Xuewen Wang, Mathews M. Dida, Russell L. Malmberg, Katrien M. Devos
Format: Article
Language:English
Published: BMC 2018-06-01
Series:BMC Plant Biology
Subjects:
Chromosomal rearrangements
Eleusine coracana
E. indica
Finger millet
Genetic mapping
Genotyping-by-sequencing (GBS)
Online Access:http://link.springer.com/article/10.1186/s12870-018-1316-3

Internet

http://link.springer.com/article/10.1186/s12870-018-1316-3

Similar Items