Sunbeam: an extensible pipeline for analyzing metagenomic sequencing experiments

Sunbeam: an extensible pipeline for analyzing metagenomic sequencing experiments

Abstract Background Analysis of mixed microbial communities using metagenomic sequencing experiments requires multiple preprocessing and analytical steps to interpret the microbial and genetic composition of samples. Analytical steps include quality control, adapter trimming, host decontamination, m...

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Bibliographic Details
Main Authors: Erik L. Clarke, Louis J. Taylor, Chunyu Zhao, Andrew Connell, Jung-Jin Lee, Bryton Fett, Frederic D. Bushman, Kyle Bittinger
Format: Article
Language:English
Published: BMC 2019-03-01
Series:Microbiome
Subjects:
Sunbeam
Shotgun metagenomic sequencing
Software
Pipeline
Quality control
Online Access:http://link.springer.com/article/10.1186/s40168-019-0658-x

Internet

http://link.springer.com/article/10.1186/s40168-019-0658-x

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