Phylogenetic-based methods for fine-scale classification of PRRSV-2 ORF5 sequences: a comparison of their robustness and reproducibility

Phylogenetic-based methods for fine-scale classification of PRRSV-2 ORF5 sequences: a comparison of their robustness and reproducibility

Disease management and epidemiological investigations of porcine reproductive and respiratory syndrome virus-type 2 (PRRSV-2) often rely on grouping together highly related sequences. In the USA, the last five years have seen a major shift within the swine industry when classifying PRRSV-2, beginnin...

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Bibliographic Details
Main Authors: Kimberly VanderWaal, Nakarin Pamornchainavakul, Mariana Kikuti, Daniel C. L. Linhares, Giovani Trevisan, Jianqiang Zhang, Tavis K. Anderson, Michael Zeller, Stephanie Rossow, Derald J. Holtkamp, Dennis N. Makau, Cesar A. Corzo, Igor A. D. Paploski
Format: Article
Language:English
Published: Frontiers Media S.A. 2024-08-01
Series:Frontiers in Virology
Subjects:
PRRS
molecular epidemiology
evolution
machine learning
nomenclature
lineages
Online Access:https://www.frontiersin.org/articles/10.3389/fviro.2024.1433931/full

Internet

https://www.frontiersin.org/articles/10.3389/fviro.2024.1433931/full

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