Protein design using structure-based residue preferences

Abstract Recent developments in protein design rely on large neural networks with up to 100s of millions of parameters, yet it is unclear which residue dependencies are critical for determining protein function. Here, we show that amino acid preferences at individual residues—without accounting for...

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Bibliographic Details
Main Authors: David Ding, Ada Y. Shaw, Sam Sinai, Nathan Rollins, Noam Prywes, David F. Savage, Michael T. Laub, Debora S. Marks
Format: Article
Language:English
Published: Nature Portfolio 2024-02-01
Series:Nature Communications
Online Access:https://doi.org/10.1038/s41467-024-45621-4