Protein design using structure-based residue preferences
Abstract Recent developments in protein design rely on large neural networks with up to 100s of millions of parameters, yet it is unclear which residue dependencies are critical for determining protein function. Here, we show that amino acid preferences at individual residues—without accounting for...
Main Authors: | David Ding, Ada Y. Shaw, Sam Sinai, Nathan Rollins, Noam Prywes, David F. Savage, Michael T. Laub, Debora S. Marks |
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Format: | Article |
Language: | English |
Published: |
Nature Portfolio
2024-02-01
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Series: | Nature Communications |
Online Access: | https://doi.org/10.1038/s41467-024-45621-4 |
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