Adversarial and variational autoencoders improve metagenomic binning

Abstract Assembly of reads from metagenomic samples is a hard problem, often resulting in highly fragmented genome assemblies. Metagenomic binning allows us to reconstruct genomes by re-grouping the sequences by their organism of origin, thus representing a crucial processing step when exploring the...

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Bibliographic Details
Main Authors: Pau Piera Líndez, Joachim Johansen, Svetlana Kutuzova, Arnor Ingi Sigurdsson, Jakob Nybo Nissen, Simon Rasmussen
Format: Article
Language:English
Published: Nature Portfolio 2023-10-01
Series:Communications Biology
Online Access:https://doi.org/10.1038/s42003-023-05452-3