PhyIN: trimming alignments by phylogenetic incompatibilities among neighbouring sites
In phylogenomics, regions of low alignment reliability and high noise are typically trimmed from multiple sequence alignments before they are used in phylogenetic inference. I introduce a new trimming tool, PhyIN, which deletes regions in which a large proportion of sites (characters) have conflicti...
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| Format: | Article |
| Language: | English |
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PeerJ Inc.
2024-12-01
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| Series: | PeerJ |
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| Online Access: | https://peerj.com/articles/18504.pdf |