Label-aware distance mitigates temporal and spatial variability for clustering and visualization of single-cell gene expression data

Abstract Clustering and visualization are essential parts of single-cell gene expression data analysis. The Euclidean distance used in most distance-based methods is not optimal. The batch effect, i.e., the variability among samples gathered from different times, tissues, and patients, introduces la...

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Bibliographic Details
Main Authors: Shaoheng Liang, Jinzhuang Dou, Ramiz Iqbal, Ken Chen
Format: Article
Language:English
Published: Nature Portfolio 2024-03-01
Series:Communications Biology
Online Access:https://doi.org/10.1038/s42003-024-05988-y