Gen2Epi: an automated whole-genome sequencing pipeline for linking full genomes to antimicrobial susceptibility and molecular epidemiological data in Neisseria gonorrhoeae

Gen2Epi: an automated whole-genome sequencing pipeline for linking full genomes to antimicrobial susceptibility and molecular epidemiological data in Neisseria gonorrhoeae

Abstract Background Recent adva1nces in whole genome sequencing (WGS) based technologies have facilitated multi-step applications for predicting antimicrobial resistance (AMR) and investigating the molecular epidemiology of Neisseria gonorrhoeae. However, generating full scaffolds of N. gonorrhoeae...

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Bibliographic Details
Main Authors: Reema Singh, Jo-Anne R. Dillon, Walter Demczuk, Anthony Kusalik
Format: Article
Language:English
Published: BMC 2019-03-01
Series:BMC Genomics
Subjects:
Bioinformatics
Whole-genome sequencing (WGS)
De novo genome assembly
Scaffolding
Molecular epidemiology
Strain typing
Online Access:http://link.springer.com/article/10.1186/s12864-019-5542-3

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http://link.springer.com/article/10.1186/s12864-019-5542-3

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