Normalization and variance stabilization of single-cell RNA-seq data using regularized negative binomial regression

Abstract Single-cell RNA-seq (scRNA-seq) data exhibits significant cell-to-cell variation due to technical factors, including the number of molecules detected in each cell, which can confound biological heterogeneity with technical effects. To address this, we present a modeling framework for the no...

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Bibliographic Details
Main Authors: Christoph Hafemeister, Rahul Satija
Format: Article
Language:English
Published: BMC 2019-12-01
Series:Genome Biology
Subjects:
Online Access:https://doi.org/10.1186/s13059-019-1874-1