Custom design and analysis of high-density oligonucleotide bacterial tiling microarrays.
BACKGROUND: High-density tiling microarrays are a powerful tool for the characterization of complete genomes. The two major computational challenges associated with custom-made arrays are design and analysis. Firstly, several genome dependent variables, such as the genome's complexity and seque...
Main Authors: | Gard O S Thomassen, Alexander D Rowe, Karin Lagesen, Jessica M Lindvall, Torbjørn Rognes |
---|---|
Format: | Article |
Language: | English |
Published: |
Public Library of Science (PLoS)
2009-01-01
|
Series: | PLoS ONE |
Online Access: | http://europepmc.org/articles/PMC2691959?pdf=render |
Similar Items
-
Tiling array analysis of UV treated Escherichia coli predicts novel differentially expressed small peptides.
by: Gard O S Thomassen, et al.
Published: (2010-01-01) -
Mismatch oligonucleotides in human and yeast: guidelines for probe design on tiling microarrays
by: Jee Justin, et al.
Published: (2008-12-01) -
Differential analysis for high density tiling microarray data
by: Kapranov Philipp, et al.
Published: (2007-09-01) -
MPrime: efficient large scale multiple primer and oligonucleotide design for customized gene microarrays
by: Khalyfa Abdelnaby, et al.
Published: (2005-07-01) -
NucDiff: in-depth characterization and annotation of differences between two sets of DNA sequences
by: Ksenia Khelik, et al.
Published: (2017-07-01)