pmparser and PMDB: resources for large-scale, open studies of the biomedical literature

PubMed is an invaluable resource for the biomedical community. Although PubMed is freely available, the existing API is not designed for large-scale analyses and the XML structure of the underlying data is inconvenient for complex queries. We developed an R package called pmparser to convert the dat...

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Bibliographic Details
Main Authors: Joshua L. Schoenbachler, Jacob J. Hughey
Format: Article
Language:English
Published: PeerJ Inc. 2021-03-01
Series:PeerJ
Subjects:
Online Access:https://peerj.com/articles/11071.pdf