RBPSpot: Learning on appropriate contextual information for RBP binding sites discovery

RBPSpot: Learning on appropriate contextual information for RBP binding sites discovery

Summary: Identifying the factors determining the RBP-RNA interactions remains a big challenge. It involves sparse binding motifs and a suitable sequence context for binding. The present work describes an approach to detect RBP binding sites in RNAs using an ultra-fast inexact k-mers search for stati...

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Bibliographic Details
Main Authors: Nitesh Kumar Sharma, Sagar Gupta, Ashwani Kumar, Prakash Kumar, Upendra Kumar Pradhan, Ravi Shankar
Format: Article
Language:English
Published: Elsevier 2021-12-01
Series:iScience
Subjects:
Sequence analysis
Systems biology
Omics
Online Access:http://www.sciencedirect.com/science/article/pii/S2589004221013523

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http://www.sciencedirect.com/science/article/pii/S2589004221013523

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