Transcription factor binding sites prediction based on modified nucleosomes.
In computational methods, position weight matrices (PWMs) are commonly applied for transcription factor binding site (TFBS) prediction. Although these matrices are more accurate than simple consensus sequences to predict actual binding sites, they usually produce a large number of false positive (FP...
Main Authors: | Mohammad Talebzadeh, Fatemeh Zare-Mirakabad |
---|---|
Format: | Article |
Language: | English |
Published: |
Public Library of Science (PLoS)
2014-01-01
|
Series: | PLoS ONE |
Online Access: | http://europepmc.org/articles/PMC3931712?pdf=render |
Similar Items
-
Prediction of nucleosome positioning based on transcription factor binding sites.
by: Xianfu Yi, et al.
Published: (2010-09-01) -
A nucleosome-guided map of transcription factor binding sites in yeast.
by: Leelavati Narlikar, et al.
Published: (2007-11-01) -
Low nucleosome occupancy is encoded around functional human transcription factor binding sites
by: Daenen Floris, et al.
Published: (2008-07-01) -
Nucleosome Presence at AML-1 Binding Sites Inversely Correlates with Ly49 Expression: Revelations from an Informatics Analysis of Nucleosomes and Immune Cell Transcription Factors.
by: Andrew Wight, et al.
Published: (2016-04-01) -
Nucleosome free regions in yeast promoters result from competitive binding of transcription factors that interact with chromatin modifiers.
by: Evgeniy A Ozonov, et al.
Published: (2013-01-01)