Unmapped short reads from whole-genome sequencing indicate potential infectious pathogens in German Black Pied cattle

Unmapped short reads from whole-genome sequencing indicate potential infectious pathogens in German Black Pied cattle

Abstract When resequencing animal genomes, some short reads cannot be mapped to the reference genome and are usually discarded. In this study, unmapped reads from 302 German Black Pied cattle were analyzed to identify potential pathogenic DNA. These unmapped reads were assembled and blasted against...

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Bibliographic Details
Main Authors: Guilherme B. Neumann, Paula Korkuć, Monika Reißmann, Manuel J. Wolf, Katharina May, Sven König, Gudrun A. Brockmann
Format: Article
Language:English
Published: BMC 2023-10-01
Series:Veterinary Research
Subjects:
Short-read sequencing
illumina sequencing
Mycoplasma
DSN
Deutsches Schwarzbuntes Niederungsrind
Bovine parvovirus 3
Online Access:https://doi.org/10.1186/s13567-023-01227-0

Internet

https://doi.org/10.1186/s13567-023-01227-0

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