VistoSeg: Processing utilities for high-resolution images for spatially resolved transcriptomics data

VistoSeg: Processing utilities for high-resolution images for spatially resolved transcriptomics data

Spatially resolved transcriptomics (SRT) is a growing field that links gene expression to anatomical context. SRT approaches that use next-generation sequencing (NGS) combine RNA sequencing with histological or fluorescent imaging to generate spatial maps of gene expression in intact tissue sections...

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Bibliographic Details
Main Authors: Madhavi Tippani, Heena R. Divecha, Joseph L. Catallini, Sang H. Kwon, Lukas M. Weber, Abby Spangler, Andrew E. Jaffe, Thomas M. Hyde, Joel E. Kleinman, Stephanie C. Hicks, Keri Martinowich, Leonardo Collado-Torres, Stephanie C. Page, Kristen R. Maynard
Format: Article
Language:English
Published: Cambridge University Press 2023-01-01
Series:Biological Imaging
Subjects:
hematoxylin and eosin
immunofluorescence
MATLAB
segmentation
spatially resolved transcriptomics
Visium
Visium-Spatial Proteogenomics
Online Access:https://www.cambridge.org/core/product/identifier/S2633903X23000235/type/journal_article

Internet

https://www.cambridge.org/core/product/identifier/S2633903X23000235/type/journal_article

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