MycoVarP: Mycobacterium Variant and Drug Resistance Prediction Pipeline for Whole-Genome Sequence Data Analysis

MycoVarP: Mycobacterium Variant and Drug Resistance Prediction Pipeline for Whole-Genome Sequence Data Analysis

Whole-genome sequencing (WGS) provides a comprehensive tool to analyze the bacterial genomes for genotype–phenotype correlations, diversity of single-nucleotide variant (SNV), and their evolution and transmission. Several online pipelines and standalone tools are available for WGS analysis of Mycoba...

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Bibliographic Details
Main Authors: Sandeep Swargam, Indu Kumari, Amit Kumar, Dibyabhaba Pradhan, Anwar Alam, Harpreet Singh, Anuja Jain, Kangjam Rekha Devi, Vishal Trivedi, Jogesh Sarma, Mahmud Hanif, Kanwar Narain, Nasreen Zafar Ehtesham, Seyed Ehtesham Hasnain, Shandar Ahmad
Format: Article
Language:English
Published: Frontiers Media S.A. 2022-06-01
Series:Frontiers in Bioinformatics
Subjects:
drug resistance
drug susceptible
lineage prediction
MDR-TB
Mycobacterium tuberculosis
PE-PPE/PGRS family
Online Access:https://www.frontiersin.org/articles/10.3389/fbinf.2021.805338/full

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https://www.frontiersin.org/articles/10.3389/fbinf.2021.805338/full

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