LASSIE: simulating large-scale models of biochemical systems on GPUs

LASSIE: simulating large-scale models of biochemical systems on GPUs

Abstract Background Mathematical modeling and in silico analysis are widely acknowledged as complementary tools to biological laboratory methods, to achieve a thorough understanding of emergent behaviors of cellular processes in both physiological and perturbed conditions. Though, the simulation of...

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Bibliographic Details
Main Authors: Andrea Tangherloni, Marco S. Nobile, Daniela Besozzi, Giancarlo Mauri, Paolo Cazzaniga
Format: Article
Language:English
Published: BMC 2017-05-01
Series:BMC Bioinformatics
Subjects:
Graphics Processing Unit
GPU computing
Reaction-based model
Deterministic simulation
Numerical integration method
LSODA
Online Access:http://link.springer.com/article/10.1186/s12859-017-1666-0

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http://link.springer.com/article/10.1186/s12859-017-1666-0

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