Knowledge of the perturbation design is essential for accurate gene regulatory network inference

Abstract The gene regulatory network (GRN) of a cell executes genetic programs in response to environmental and internal cues. Two distinct classes of methods are used to infer regulatory interactions from gene expression: those that only use observed changes in gene expression, and those that use b...

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Bibliographic Details
Main Authors: Deniz Seçilmiş, Thomas Hillerton, Andreas Tjärnberg, Sven Nelander, Torbjörn E. M. Nordling, Erik L. L. Sonnhammer
Format: Article
Language:English
Published: Nature Portfolio 2022-10-01
Series:Scientific Reports
Online Access:https://doi.org/10.1038/s41598-022-19005-x