CAULIFINDER: a pipeline for the automated detection and annotation of caulimovirid endogenous viral elements in plant genomes

CAULIFINDER: a pipeline for the automated detection and annotation of caulimovirid endogenous viral elements in plant genomes

Abstract Plant, animal and protist genomes often contain endogenous viral elements (EVEs), which correspond to partial and sometimes entire viral genomes that have been captured in the genome of their host organism through a variety of integration mechanisms. While the number of sequenced eukaryotic...

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Bibliographic Details
Main Authors: Héléna Vassilieff, Sana Haddad, Véronique Jamilloux, Nathalie Choisne, Vikas Sharma, Delphine Giraud, Mariène Wan, Saad Serfraz, Andrew D. W. Geering, Pierre-Yves Teycheney, Florian Maumus
Format: Article
Language:English
Published: BMC 2022-12-01
Series:Mobile DNA
Subjects:
Endogenous viral elements
Plant genomes
Paleovirology
Caulimoviridae
Repetitive elements
Bioinformatics
Online Access:https://doi.org/10.1186/s13100-022-00288-w

Internet

https://doi.org/10.1186/s13100-022-00288-w

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