Delving into gene-set multiplex networks facilitated by a k-nearest neighbor-based measure of similarity

Delving into gene-set multiplex networks facilitated by a k-nearest neighbor-based measure of similarity

Gene sets are functional units for living cells. Previously, limited studies investigated the complex relations among gene sets, but documents about their altering patterns across biological conditions still need to be prepared. In this study, we adopted and modified a classical k-nearest neighbor-b...

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Bibliographic Details
Main Authors: Cheng Zheng, Man Wang, Ryo Yamada, Daigo Okada
Format: Article
Language:English
Published: Elsevier 2023-01-01
Series:Computational and Structural Biotechnology Journal
Subjects:
Gene set
Multiplex network
k-nearest neighbor-based similarity
Multiplex clustering coefficient
Multiplex PageRank centrality
Gene set enrichment analysis
Online Access:http://www.sciencedirect.com/science/article/pii/S2001037023003513

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http://www.sciencedirect.com/science/article/pii/S2001037023003513

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