The complete chloroplast genome of weedy rice Oryza sativa f. spontanea
The emergence of weedy rice (Oryza sativa f. spontanea) has been considered as a serious global agricultural problem in recent decades. To better understand its speciation, here we assembled the complete chloroplast genome of O. sativa f. spontanea with the length of 134,502 bp. The assembly contain...
| Main Authors: | , , , , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2021-10-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2021.1977197 |
| _version_ | 1827772313172443136 |
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| author | Chenfeng Dong Yiyu Hu Chuyu Ye Longjiang Fan Longbiao Guo |
| author_facet | Chenfeng Dong Yiyu Hu Chuyu Ye Longjiang Fan Longbiao Guo |
| author_sort | Chenfeng Dong |
| collection | DOAJ |
| description | The emergence of weedy rice (Oryza sativa f. spontanea) has been considered as a serious global agricultural problem in recent decades. To better understand its speciation, here we assembled the complete chloroplast genome of O. sativa f. spontanea with the length of 134,502 bp. The assembly contains a large single-copy (LSC, 80,549 bp), a small single-copy (SSC, 12,347 bp) and a pair of inverted repeats (IRa and IRb, 20,803 bp each). A total of 132 unique genes were annotated, including 82 protein-coding genes, 42 tRNA genes and eight rRNA genes. Phylogenetic analysis showed that O. sativa f. spontanea (indica type) appears closely related to cultivated indica rice rather than wild rice, supporting the hypothesis that weedy rice originated from cultivated rice. |
| first_indexed | 2024-03-11T13:07:35Z |
| format | Article |
| id | doaj.art-8269ddc6fd2f494a93a117bba61e67ab |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:07:35Z |
| publishDate | 2021-10-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-8269ddc6fd2f494a93a117bba61e67ab2023-11-03T14:28:31ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592021-10-016103016301710.1080/23802359.2021.19771971977197The complete chloroplast genome of weedy rice Oryza sativa f. spontaneaChenfeng Dong0Yiyu Hu1Chuyu Ye2Longjiang Fan3Longbiao Guo4Institute of Crop Sciences, College of Agriculture and Biotechnology, Zhejiang UniversityInstitute of Crop Sciences, College of Agriculture and Biotechnology, Zhejiang UniversityInstitute of Crop Sciences, College of Agriculture and Biotechnology, Zhejiang UniversityInstitute of Crop Sciences, College of Agriculture and Biotechnology, Zhejiang UniversityState Key Laboratory of Rice Biology, China National Rice Research InstituteThe emergence of weedy rice (Oryza sativa f. spontanea) has been considered as a serious global agricultural problem in recent decades. To better understand its speciation, here we assembled the complete chloroplast genome of O. sativa f. spontanea with the length of 134,502 bp. The assembly contains a large single-copy (LSC, 80,549 bp), a small single-copy (SSC, 12,347 bp) and a pair of inverted repeats (IRa and IRb, 20,803 bp each). A total of 132 unique genes were annotated, including 82 protein-coding genes, 42 tRNA genes and eight rRNA genes. Phylogenetic analysis showed that O. sativa f. spontanea (indica type) appears closely related to cultivated indica rice rather than wild rice, supporting the hypothesis that weedy rice originated from cultivated rice.http://dx.doi.org/10.1080/23802359.2021.1977197chloroplast genomeoryza sativa f. spontaneaphylogenetic analysis |
| spellingShingle | Chenfeng Dong Yiyu Hu Chuyu Ye Longjiang Fan Longbiao Guo The complete chloroplast genome of weedy rice Oryza sativa f. spontanea Mitochondrial DNA. Part B. Resources chloroplast genome oryza sativa f. spontanea phylogenetic analysis |
| title | The complete chloroplast genome of weedy rice Oryza sativa f. spontanea |
| title_full | The complete chloroplast genome of weedy rice Oryza sativa f. spontanea |
| title_fullStr | The complete chloroplast genome of weedy rice Oryza sativa f. spontanea |
| title_full_unstemmed | The complete chloroplast genome of weedy rice Oryza sativa f. spontanea |
| title_short | The complete chloroplast genome of weedy rice Oryza sativa f. spontanea |
| title_sort | complete chloroplast genome of weedy rice oryza sativa f spontanea |
| topic | chloroplast genome oryza sativa f. spontanea phylogenetic analysis |
| url | http://dx.doi.org/10.1080/23802359.2021.1977197 |
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