MitoHiFi: a python pipeline for mitochondrial genome assembly from PacBio high fidelity reads

MitoHiFi: a python pipeline for mitochondrial genome assembly from PacBio high fidelity reads

Abstract Background  PacBio high fidelity (HiFi) sequencing reads are both long (15–20 kb) and highly accurate (> Q20). Because of these properties, they have revolutionised genome assembly leading to more accurate and contiguous genomes. In eukaryotes the mitochondrial genome is sequenced alongs...

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Bibliographic Details
Main Authors: Marcela Uliano-Silva, João Gabriel R. N. Ferreira, Ksenia Krasheninnikova, Darwin Tree of Life Consortium, Giulio Formenti, Linelle Abueg, James Torrance, Eugene W. Myers, Richard Durbin, Mark Blaxter, Shane A. McCarthy
Format: Article
Language:English
Published: BMC 2023-07-01
Series:BMC Bioinformatics
Subjects:
MitoHiFi
Docker
Mitogenome
Heteroplasmy
Long reads
HiFi
Online Access:https://doi.org/10.1186/s12859-023-05385-y

Internet

https://doi.org/10.1186/s12859-023-05385-y

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