Relation extraction between bacteria and biotopes from biomedical texts with attention mechanisms and domain-specific contextual representations

Relation extraction between bacteria and biotopes from biomedical texts with attention mechanisms and domain-specific contextual representations

Abstract Background The Bacteria Biotope (BB) task is a biomedical relation extraction (RE) that aims to study the interaction between bacteria and their locations. This task is considered to pertain to fundamental knowledge in applied microbiology. Some previous investigations conducted the study b...

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Bibliographic Details
Main Authors: Amarin Jettakul, Duangdao Wichadakul, Peerapon Vateekul
Format: Article
Language:English
Published: BMC 2019-12-01
Series:BMC Bioinformatics
Subjects:
Biomedical text mining
Relation extraction
Deep learning
Attention networks
Contextual word-embeddings
Domain-specific language
Online Access:https://doi.org/10.1186/s12859-019-3217-3

Internet

https://doi.org/10.1186/s12859-019-3217-3

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