Efficient sequencing data compression and FPGA acceleration based on a two-step framework

Efficient sequencing data compression and FPGA acceleration based on a two-step framework

With the increasing throughput of modern sequencing instruments, the cost of storing and transmitting sequencing data has also increased dramatically. Although many tools have been developed to compress sequencing data, there is still a need to develop a compressor with a higher compression ratio. W...

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Bibliographic Details
Main Authors: Shifu Chen, Yaru Chen, Zhouyang Wang, Wenjian Qin, Jing Zhang, Heera Nand, Jishuai Zhang, Jun Li, Xiaoni Zhang, Xiaoming Liang, Mingyan Xu
Format: Article
Language:English
Published: Frontiers Media S.A. 2023-09-01
Series:Frontiers in Genetics
Subjects:
compression
fastq
sequencing
repaq
LZMA
FPGA acceleration
Online Access:https://www.frontiersin.org/articles/10.3389/fgene.2023.1260531/full

Internet

https://www.frontiersin.org/articles/10.3389/fgene.2023.1260531/full

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